Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| starch-binding associating with outer membrane | SAMN04488101_112121 | Not Available | + | 4628164 - 4629867 | 63331.7 |
| protein of unknown function | SAMN04488101_112122 | Not Available | + | 4629897 - 4631576 | 60696.5 |
| protein of unknown function | SAMN04488101_112123 | Not Available | + | 4631649 - 4633055 | 53061.6 |
| undecaprenyl-diphosphatase | SAMN04488101_112124 | Not Available | + | 4633183 - 4633788 | 22021.8 |
| sm-20-related protein | SAMN04488101_112125 | Not Available | - | 4633792 - 4634385 | 23073.3 |
| hypothetical protein | SAMN04488101_112126 | Not Available | + | 4634499 - 4635701 | 44737.6 |
| dgtpase | SAMN04488101_112127 | Not Available | + | 4635788 - 4637131 | 50599.7 |
| his kinase a (phospho-acceptor) domain-containing protein | SAMN04488101_112128 | Not Available | + | 4637177 - 4638973 | 67104.3 |
| dipeptidase d | SAMN04488101_112129 | Not Available | + | 4639040 - 4640494 | 52606.6 |
| serine o-acetyltransferase | SAMN04488101_112130 | Not Available | + | 4640550 - 4641362 | 30014.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.