Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| abc-type multidrug transport system, atpase component | SAMN04488101_112111 | Not Available | - | 4617135 - 4617785 | 24861.7 |
| hypothetical protein | SAMN04488101_112112 | Not Available | - | 4617766 - 4618089 | 12613.0 |
| hypothetical protein | SAMN04488101_112113 | Not Available | + | 4618181 - 4618486 | 11523.6 |
| l,d-transpeptidase catalytic domain | SAMN04488101_112114 | Not Available | - | 4618490 - 4619269 | 28046.4 |
| hypothetical protein | SAMN04488101_112115 | Not Available | - | 4619464 - 4619820 | 13570.5 |
| hypothetical protein | SAMN04488101_112116 | Not Available | - | 4620110 - 4621153 | 41135.2 |
| luciferase family oxidoreductase, group 1 | SAMN04488101_112117 | Not Available | + | 4621308 - 4622315 | 36601.8 |
| rna polymerase sigma-70 factor, bacteroides expansion family 1 | SAMN04488101_112118 | Not Available | + | 4622486 - 4623088 | 23770.2 |
| fecr family protein | SAMN04488101_112119 | Not Available | + | 4623147 - 4624301 | 42565.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_112120 | Not Available | + | 4624541 - 4628155 | 133288.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.