Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| Trna-cys | Not Available | Not Available | + | 4609868 - 4609942 | Not Available |
| hypothetical protein | SAMN04488101_112102 | Not Available | - | 4609949 - 4610194 | 9270.83 |
| hypothetical protein | SAMN04488101_112103 | Not Available | - | 4610291 - 4610686 | 16064.0 |
| hypothetical protein | SAMN04488101_112104 | Not Available | + | 4610881 - 4611102 | 8503.12 |
| conserved hypothetical protein (putative transposase or invertase) | SAMN04488101_112105 | Not Available | + | 4611382 - 4611582 | 7285.78 |
| ribosomal protein s18 acetylase rimi | SAMN04488101_112106 | Not Available | - | 4611577 - 4612413 | 32130.6 |
| uncharacterized membrane protein yccc | SAMN04488101_112107 | Not Available | - | 4612581 - 4614707 | 80315.5 |
| hypothetical protein | SAMN04488101_112108 | Not Available | + | 4614905 - 4615732 | 30771.2 |
| hypothetical protein | SAMN04488101_112109 | Not Available | + | 4615900 - 4616544 | 23901.0 |
| hypothetical protein | SAMN04488101_112110 | Not Available | + | 4616674 - 4617138 | 17900.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.