Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| amylo-alpha-1,6-glucosidase | SAMN04488101_11291 | Not Available | + | 4595360 - 4596655 | 49396.4 |
| glycosyl hydrolases family 38 c-terminal domain-containing protein | SAMN04488101_11292 | Not Available | + | 4596695 - 4599352 | 99606.3 |
| hypothetical protein | SAMN04488101_11293 | Not Available | - | 4599728 - 4599964 | 9214.19 |
| arylsulfatase a | SAMN04488101_11294 | Not Available | + | 4600392 - 4601921 | 57730.5 |
| uncharacterized protein, contains gba2_n and duf608 domains | SAMN04488101_11295 | Not Available | + | 4601937 - 4604660 | 101611.0 |
| d-ribose pyranose/furanose isomerase rbsd | SAMN04488101_11296 | Not Available | + | 4604671 - 4605267 | 22889.7 |
| alpha-l-fucosidase 2 | SAMN04488101_11297 | Not Available | + | 4605403 - 4607730 | 86801.5 |
| predicted phosphoesterase | SAMN04488101_11298 | Not Available | - | 4607844 - 4608545 | 25535.8 |
| nucleotidyl transferase of unknown function | SAMN04488101_11299 | Not Available | - | 4608574 - 4609341 | 30057.5 |
| hypothetical protein | SAMN04488101_112100 | Not Available | + | 4609645 - 4609857 | 7767.49 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.