Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_11281 | Not Available | + | 4578710 - 4579954 | 46404.8 |
| alpha-glucosidase | SAMN04488101_11282 | Not Available | + | 4580000 - 4581892 | 70396.2 |
| mfs transporter, sugar porter (sp) family | SAMN04488101_11283 | Not Available | + | 4581935 - 4583281 | 48987.2 |
| tfp pilus assembly protein pilf | SAMN04488101_11284 | Not Available | + | 4583355 - 4586684 | 126946.0 |
| beta-galactosidase | SAMN04488101_11285 | Not Available | + | 4586740 - 4589289 | 95922.2 |
| gntr family transcriptional regulator | SAMN04488101_11286 | Not Available | + | 4589470 - 4590210 | 28618.5 |
| mannose-6-phosphate isomerase, class i | SAMN04488101_11287 | Not Available | + | 4590230 - 4592008 | 68487.2 |
| mfs transporter, sp family, arabinose:h+ symporter | SAMN04488101_11288 | Not Available | + | 4592067 - 4593482 | 51541.4 |
| hypothetical protein | SAMN04488101_11289 | Not Available | + | 4593512 - 4594327 | 31434.4 |
| phytanoyl-coa dioxygenase (phyh) | SAMN04488101_11290 | Not Available | + | 4594353 - 4595327 | 37136.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.