Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_11271 | Not Available | - | 4564533 - 4564679 | 5771.47 |
| hypothetical protein | SAMN04488101_11272 | Not Available | - | 4564797 - 4565330 | 20492.1 |
| hypothetical protein | SAMN04488101_11273 | Not Available | - | 4565355 - 4565951 | 22733.3 |
| hypothetical protein | SAMN04488101_11274 | Not Available | + | 4566325 - 4567158 | 30961.5 |
| iron complex outermembrane recepter protein | SAMN04488101_11275 | Not Available | - | 4567258 - 4569627 | 86342.3 |
| alpha-l-fucosidase | SAMN04488101_11276 | Not Available | + | 4569858 - 4571195 | 50808.5 |
| arac-type dna-binding protein | SAMN04488101_11277 | Not Available | - | 4571256 - 4572203 | 36462.1 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11278 | Not Available | + | 4572527 - 4575616 | 111819.0 |
| starch-binding associating with outer membrane | SAMN04488101_11279 | Not Available | + | 4575621 - 4577348 | 64838.7 |
| glycosyl hydrolase family 88 | SAMN04488101_11280 | Not Available | + | 4577361 - 4578608 | 47630.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.