Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| conserved hypothetical protein (putative transposase or invertase) | SAMN04488101_11261 | Not Available | + | 4555196 - 4556116 | 35428.2 |
| protein of unknown function | SAMN04488101_11262 | Not Available | - | 4556152 - 4557216 | 41372.7 |
| ubie/coq5 methyltransferase family protein | SAMN04488101_11263 | Not Available | + | 4557347 - 4558192 | 31006.6 |
| methyltransferase domain-containing protein | SAMN04488101_11264 | Not Available | - | 4558216 - 4558809 | 23141.2 |
| methyltransferase domain-containing protein | SAMN04488101_11265 | Not Available | - | 4558815 - 4559396 | 22501.3 |
| 8-amino-7-oxononanoate synthase | SAMN04488101_11266 | Not Available | - | 4559398 - 4560603 | 43984.9 |
| uncharacterized membrane protein yoak, upf0700 family | SAMN04488101_11267 | Not Available | + | 4560846 - 4561595 | 27610.4 |
| hypothetical protein | SAMN04488101_11268 | Not Available | + | 4561684 - 4561953 | 10183.3 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN04488101_11269 | Not Available | + | 4561974 - 4562681 | 26454.3 |
| hypothetical protein | SAMN04488101_11270 | Not Available | - | 4562714 - 4564429 | 64407.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.