Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11251 | Not Available | - | 4542656 - 4545742 | 113288.0 |
| predicted oxidoreductase | SAMN04488101_11252 | Not Available | - | 4546187 - 4547182 | 36816.9 |
| hypothetical protein | SAMN04488101_11253 | Not Available | - | 4547363 - 4547980 | 24271.3 |
| hypothetical protein | SAMN04488101_11254 | Not Available | - | 4548011 - 4548415 | 15642.0 |
| conserved hypothetical protein (putative transposase or invertase) | SAMN04488101_11255 | Not Available | + | 4548644 - 4549555 | 35436.3 |
| gliding motility-associated c-terminal domain-containing protein | SAMN04488101_11256 | Not Available | + | 4549692 - 4552853 | 113721.0 |
| dihydrofolate reductase | SAMN04488101_11257 | Not Available | - | 4552971 - 4553495 | 19735.7 |
| hypothetical protein | SAMN04488101_11258 | Not Available | - | 4553542 - 4553907 | 14229.1 |
| hypothetical protein | SAMN04488101_11259 | Not Available | + | 4554045 - 4554416 | 13714.3 |
| protein of unknown function | SAMN04488101_11260 | Not Available | + | 4554479 - 4554853 | 13957.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.