Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| calcineurin-like phosphoesterase | SAMN04488101_11241 | Not Available | + | 4530627 - 4531550 | 35426.9 |
| hypothetical protein | SAMN04488101_11242 | Not Available | + | 4531897 - 4533276 | 52588.6 |
| hypothetical protein | SAMN04488101_11243 | Not Available | + | 4533468 - 4533602 | 4827.8 |
| hypothetical protein | SAMN04488101_11244 | Not Available | + | 4533648 - 4534085 | 16790.4 |
| conserved hypothetical integral membrane protein | SAMN04488101_11245 | Not Available | - | 4534152 - 4535408 | 45025.0 |
| phytoene dehydrogenase-related protein | SAMN04488101_11246 | Not Available | - | 4535429 - 4536862 | 51315.9 |
| hypothetical protein | SAMN04488101_11247 | Not Available | - | 4536843 - 4538414 | 61230.5 |
| hypothetical protein | SAMN04488101_11248 | Not Available | - | 4538437 - 4539909 | 56095.2 |
| hypothetical protein | SAMN04488101_11249 | Not Available | - | 4539913 - 4541244 | 51159.8 |
| ragb/susd domain-containing protein | SAMN04488101_11250 | Not Available | - | 4541263 - 4542636 | 51486.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.