Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ferritin-like | SAMN04488101_11221 | Not Available | - | 4510699 - 4512057 | 50997.6 |
| hypothetical protein | SAMN04488101_11222 | Not Available | + | 4512701 - 4513429 | 28445.0 |
| hypothetical protein | SAMN04488101_11223 | Not Available | + | 4513450 - 4514013 | 21840.3 |
| conserved hypothetical protein (putative transposase or invertase) | SAMN04488101_11224 | Not Available | + | 4514076 - 4514549 | 17993.0 |
| hypothetical protein | SAMN04488101_11225 | Not Available | - | 4514615 - 4515097 | 18401.9 |
| dna-binding transcriptional regulator, xre-family hth domain | SAMN04488101_11226 | Not Available | - | 4515170 - 4515421 | 9679.69 |
| hypothetical protein | SAMN04488101_11227 | Not Available | + | 4516259 - 4516699 | 16973.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_11228 | Not Available | + | 4516733 - 4519909 | 118396.0 |
| susd family protein | SAMN04488101_11229 | Not Available | + | 4519912 - 4521297 | 51903.8 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488101_11230 | Not Available | + | 4521326 - 4522771 | 54649.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.