Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_11211 | Not Available | + | 4495582 - 4497438 | 69650.3 |
| hnh endonuclease | SAMN04488101_11212 | Not Available | - | 4497470 - 4498531 | 41103.8 |
| hnh endonuclease | SAMN04488101_11213 | Not Available | - | 4498541 - 4499575 | 40045.6 |
| t/g mismatch-specific endonuclease | SAMN04488101_11214 | Not Available | + | 4499705 - 4500127 | 16741.5 |
| dna (cytosine-5)-methyltransferase 1 | SAMN04488101_11215 | Not Available | + | 4500227 - 4501345 | 42218.6 |
| histidine kinase-, dna gyrase b-, and hsp90-like atpase | SAMN04488101_11216 | Not Available | + | 4501335 - 4504235 | 112721.0 |
| hypothetical protein | SAMN04488101_11217 | Not Available | + | 4504225 - 4505946 | 66108.0 |
| hypothetical protein | SAMN04488101_11218 | Not Available | - | 4506834 - 4507472 | 24531.2 |
| hypothetical protein | SAMN04488101_11219 | Not Available | + | 4508246 - 4508575 | 12099.1 |
| hypothetical protein | SAMN04488101_11220 | Not Available | - | 4508812 - 4510695 | 70509.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.