Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| alkylated dna repair dioxygenase alkb | SAMN04488101_111151 | Not Available | - | 4461582 - 4462190 | 23168.7 |
| helix-turn-helix domain-containing protein | SAMN04488101_111152 | Not Available | + | 4462407 - 4463498 | 41848.6 |
| gliding motility-associated c-terminal domain-containing protein | SAMN04488101_111153 | Not Available | + | 4463641 - 4469535 | 200607.0 |
| type ix secretion system membrane protein, porp/sprf family | SAMN04488101_111154 | Not Available | + | 4469571 - 4470458 | 32215.3 |
| gliding motility-associated c-terminal domain-containing protein/por secretion system c-terminal sorting domain-containing protein | SAMN04488101_111155 | Not Available | + | 4470732 - 4471307 | 21383.0 |
| hypothetical protein | SAMN04488101_111156 | Not Available | + | 4471325 - 4472211 | 30556.0 |
| hypothetical protein | SAMN04488101_111157 | Not Available | + | 4472547 - 4474922 | 78079.2 |
| type ix secretion system membrane protein, porp/sprf family | SAMN04488101_111158 | Not Available | + | 4474965 - 4475852 | 32370.6 |
| gliding motility-associated c-terminal domain-containing protein | SAMN04488101_111159 | Not Available | + | 4476185 - 4476664 | 17801.1 |
| collagen triple helix repeat-containing protein | SAMN04488101_111160 | Not Available | + | 4476689 - 4478160 | 48798.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.