Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hexosaminidase | SAMN04488101_111141 | Not Available | + | 4451869 - 4454172 | 87289.1 |
| ammonium transporter | SAMN04488101_111142 | Not Available | + | 4454664 - 4456040 | 48714.2 |
| putative beta-barrel porin-2, ompl-like. bbp2 | SAMN04488101_111143 | Not Available | + | 4456089 - 4457117 | 36305.7 |
| protein of unknown function | SAMN04488101_111144 | Not Available | + | 4457199 - 4457780 | 21720.3 |
| hypothetical protein | SAMN04488101_111145 | Not Available | - | 4457781 - 4458254 | 17745.5 |
| hypothetical protein | SAMN04488101_111146 | Not Available | + | 4458472 - 4458690 | 8742.83 |
| atp-independent rna helicase dbpa | SAMN04488101_111147 | Not Available | + | 4458716 - 4460023 | 48865.9 |
| protein of unknown function | SAMN04488101_111148 | Not Available | + | 4460025 - 4460276 | 9506.56 |
| pas domain s-box-containing protein | SAMN04488101_111149 | Not Available | - | 4460273 - 4461079 | 30998.6 |
| cupin domain protein | SAMN04488101_111150 | Not Available | + | 4461216 - 4461560 | 12773.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.