Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| pif1-like helicase | SAMN04488101_111121 | Not Available | - | 4424434 - 4426347 | 72116.5 |
| hypothetical protein | SAMN04488101_111122 | Not Available | + | 4426589 - 4426900 | 11610.2 |
| hypothetical protein | SAMN04488101_111123 | Not Available | + | 4426972 - 4427214 | 8578.02 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_111124 | Not Available | + | 4427388 - 4427984 | 23174.5 |
| fecr family protein | SAMN04488101_111125 | Not Available | + | 4428075 - 4429262 | 43891.4 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_111126 | Not Available | + | 4429448 - 4432963 | 132457.0 |
| susd family protein | SAMN04488101_111127 | Not Available | + | 4432975 - 4434453 | 55764.6 |
| protein of unknown function | SAMN04488101_111128 | Not Available | + | 4434480 - 4435211 | 27418.1 |
| pkd-like family protein | SAMN04488101_111129 | Not Available | + | 4435227 - 4436834 | 59738.2 |
| thioredoxin-like | SAMN04488101_111130 | Not Available | + | 4436927 - 4438240 | 50188.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.