Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| molybdopterin molybdochelatase | SAMN04488101_111111 | Not Available | - | 4410616 - 4411812 | 43617.6 |
| cyclic pyranopterin monophosphate synthase subunit moac | SAMN04488101_111112 | Not Available | - | 4411814 - 4412728 | 32774.0 |
| adenylyltransferase and sulfurtransferase | SAMN04488101_111113 | Not Available | - | 4412732 - 4413808 | 39931.0 |
| assimilatory nitrite reductase (nad(p)h) small subunit | SAMN04488101_111114 | Not Available | - | 4413841 - 4414185 | 12675.1 |
| assimilatory nitrite reductase (nad(p)h) large subunit precursor | SAMN04488101_111115 | Not Available | - | 4414203 - 4416716 | 92031.4 |
| uroporphyrin-iii c-methyltransferase | SAMN04488101_111116 | Not Available | + | 4416995 - 4417732 | 26513.5 |
| hypothetical protein | SAMN04488101_111117 | Not Available | + | 4417843 - 4418049 | 7757.71 |
| amino acid/polyamine/organocation transporter, apc superfamily | SAMN04488101_111118 | Not Available | - | 4418125 - 4419822 | 60934.2 |
| k(+)-stimulated pyrophosphate-energized sodium pump | SAMN04488101_111119 | Not Available | - | 4420006 - 4422309 | 79737.4 |
| amino acid/polyamine/organocation transporter, apc superfamily | SAMN04488101_111120 | Not Available | + | 4422951 - 4424420 | 52932.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.