Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| periplasmic chaperone for outer membrane proteins skp | SAMN04488101_11191 | Not Available | + | 4389897 - 4390454 | 20424.7 |
| glutamate racemase | SAMN04488101_11192 | Not Available | + | 4390504 - 4391373 | 32409.0 |
| amidophosphoribosyltransferase | SAMN04488101_11193 | Not Available | + | 4391596 - 4393497 | 71850.0 |
| threonine/homoserine/homoserine lactone efflux protein | SAMN04488101_11194 | Not Available | - | 4393779 - 4394408 | 23631.8 |
| dcmp deaminase | SAMN04488101_11195 | Not Available | + | 4394523 - 4395005 | 17433.8 |
| gmp synthase (glutamine-hydrolysing) | SAMN04488101_11196 | Not Available | + | 4395053 - 4396579 | 56332.4 |
| abc-type branched-chain amino acid transport system, substrate-binding protein | SAMN04488101_11197 | Not Available | + | 4396536 - 4397759 | 45736.3 |
| 16s rrna (cytosine967-c5)-methyltransferase | SAMN04488101_11198 | Not Available | + | 4397756 - 4398922 | 45008.7 |
| multiple antibiotic resistance protein | SAMN04488101_11199 | Not Available | - | 4398965 - 4399534 | 20572.2 |
| l-rhamnose mutarotase | SAMN04488101_111100 | Not Available | + | 4399703 - 4400014 | 11753.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.