Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| probable protein-translocating porin port | SAMN04488101_11181 | Not Available | + | 4380589 - 4381323 | 27589.1 |
| nadp-dependent 3-hydroxy acid dehydrogenase ydfg | SAMN04488101_11182 | Not Available | + | 4381426 - 4382181 | 27755.7 |
| hypothetical protein | SAMN04488101_11183 | Not Available | + | 4382194 - 4382640 | 16305.0 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN04488101_11184 | Not Available | + | 4382755 - 4383519 | 28829.0 |
| cbs domain-containing protein | SAMN04488101_11185 | Not Available | + | 4383519 - 4384181 | 24782.6 |
| nad+ kinase | SAMN04488101_11186 | Not Available | + | 4384219 - 4385100 | 33182.7 |
| hypothetical protein | SAMN04488101_11187 | Not Available | + | 4385081 - 4385899 | 30736.4 |
| undecaprenyl diphosphate synthase | SAMN04488101_11188 | Not Available | + | 4385918 - 4386658 | 28246.7 |
| beta-barrel assembly machine subunit bama | SAMN04488101_11189 | Not Available | + | 4386772 - 4389288 | 93896.3 |
| periplasmic chaperone for outer membrane proteins skp | SAMN04488101_11190 | Not Available | + | 4389323 - 4389853 | 20371.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.