Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_101311 | Not Available | + | 345815 - 348970 | 115348.0 |
| starch-binding associating with outer membrane | SAMN04488101_101312 | Not Available | + | 348990 - 350846 | 68007.5 |
| protein of unknown function | SAMN04488101_101313 | Not Available | + | 350857 - 351750 | 32598.8 |
| heparinase ii/iii-like protein | SAMN04488101_101314 | Not Available | + | 351762 - 353681 | 71511.8 |
| glycosyl hydrolase family 88 | SAMN04488101_101315 | Not Available | + | 353685 - 354869 | 45398.0 |
| por secretion system c-terminal sorting domain-containing protein | SAMN04488101_101316 | Not Available | + | 354880 - 358767 | 138032.0 |
| alpha-l-fucosidase | SAMN04488101_101317 | Not Available | + | 358782 - 358934 | 5970.22 |
| lysophospholipase l1 | SAMN04488101_101318 | Not Available | + | 359004 - 360383 | 52326.1 |
| polysaccharide pyruvyl transferase | SAMN04488101_101319 | Not Available | + | 360355 - 361671 | 49585.4 |
| hypothetical protein | SAMN04488101_101320 | Not Available | - | 362093 - 362278 | 6968.11 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.