Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_101281 | Not Available | + | 308283 - 311792 | 130881.0 |
| starch-binding associating with outer membrane | SAMN04488101_101282 | Not Available | + | 311789 - 313141 | 51700.0 |
| thioredoxin-like | SAMN04488101_101283 | Not Available | + | 313148 - 314665 | 57825.3 |
| hypothetical protein | SAMN04488101_101284 | Not Available | - | 314660 - 314821 | 6170.63 |
| hypothetical protein | SAMN04488101_101285 | Not Available | + | 315090 - 315224 | 5342.57 |
| fic family protein | SAMN04488101_101286 | Not Available | + | 315290 - 316399 | 41847.6 |
| predicted nuclease of restriction endonuclease-like (recb) superfamily, duf1016 family | SAMN04488101_101287 | Not Available | - | 316675 - 317697 | 39640.6 |
| hypothetical protein | SAMN04488101_101288 | Not Available | - | 317833 - 317958 | 4581.62 |
| signal transduction histidine kinase | SAMN04488101_101289 | Not Available | + | 318206 - 319981 | 67657.1 |
| rieske | SAMN04488101_101290 | Not Available | + | 320033 - 321598 | 57507.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.