Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| relaxase/mobilisation nuclease domain-containing protein | SAMN04488101_101272 | Not Available | + | 294098 - 295357 | 47069.1 |
| type iv secretory pathway, vird4 component, trag/trad family atpase | SAMN04488101_101273 | Not Available | + | 295368 - 297410 | 76831.3 |
| 5s ribosomal rna . bacterial tsu | Not Available | Not Available | + | 295527 - 295638 | 18.01 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_101274 | Not Available | + | 297553 - 298155 | 23080.9 |
| fecr family protein | SAMN04488101_101275 | Not Available | + | 298252 - 299499 | 45657.2 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_101276 | Not Available | + | 299637 - 303152 | 131762.0 |
| susd family protein | SAMN04488101_101277 | Not Available | + | 303163 - 304551 | 52948.8 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488101_101278 | Not Available | + | 304563 - 306029 | 56233.8 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_101279 | Not Available | + | 306197 - 306793 | 22899.8 |
| fecr family protein | SAMN04488101_101280 | Not Available | + | 306878 - 308041 | 43339.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.