Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| acyl-coa hydrolase | SAMN04488101_101242 | Not Available | - | 266007 - 266528 | 19342.4 |
| protein of unknown function | SAMN04488101_101243 | Not Available | - | 266587 - 267855 | 48752.5 |
| atp-binding cassette, subfamily f, member 3 | SAMN04488101_101244 | Not Available | - | 267852 - 269765 | 72211.1 |
| dihydroorotate oxidase a | SAMN04488101_101245 | Not Available | + | 269786 - 270859 | 39855.3 |
| hypothetical protein | SAMN04488101_101246 | Not Available | - | 271263 - 271439 | 6544.06 |
| Trna-cys | Not Available | Not Available | + | 271468 - 271541 | Not Available |
| rna methyltransferase, trmh family | SAMN04488101_101248 | Not Available | - | 271591 - 272340 | 27654.8 |
| outer membrane protein assembly factor bama | SAMN04488101_101249 | Not Available | + | 272364 - 274730 | 90433.9 |
| hypothetical protein | SAMN04488101_101250 | Not Available | - | 274727 - 275257 | 19970.5 |
| tspo and mbr related proteins | SAMN04488101_101251 | Not Available | - | 275284 - 275757 | 17866.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.