Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma-70 factor, bacteroides expansion family 1 | SAMN04488101_101192 | Not Available | + | 194405 - 194998 | 23244.0 |
| fecr family protein | SAMN04488101_101193 | Not Available | + | 195054 - 196229 | 44124.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_101194 | Not Available | + | 196326 - 199826 | 127986.0 |
| starch-binding associating with outer membrane | SAMN04488101_101195 | Not Available | + | 199839 - 201695 | 67910.9 |
| protein of unknown function | SAMN04488101_101196 | Not Available | + | 201689 - 202597 | 33775.2 |
| fad dependent oxidoreductase | SAMN04488101_101197 | Not Available | + | 202624 - 204669 | 75517.5 |
| heparin/heparan-sulfate lyase | SAMN04488101_101198 | Not Available | + | 204704 - 207472 | 102962.0 |
| hypothetical protein | SAMN04488101_101199 | Not Available | - | 207737 - 207883 | 5477.41 |
| hypothetical protein | SAMN04488101_101200 | Not Available | + | 208048 - 208491 | 17330.4 |
| sigma-70 region 2 | SAMN04488101_101201 | Not Available | + | 208537 - 209160 | 23960.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.