Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dipeptidyl-peptidase-4 | SAMN04488101_101172 | Not Available | + | 163264 - 165420 | 80939.5 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_101173 | Not Available | - | 165543 - 166106 | 21644.9 |
| fecr family protein | SAMN04488101_101174 | Not Available | - | 166108 - 167226 | 42281.9 |
| valyl-trna synthetase | SAMN04488101_101175 | Not Available | + | 167630 - 170293 | 101688.0 |
| regulatory protein, gntr family | SAMN04488101_101176 | Not Available | - | 170667 - 171782 | 43189.3 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_101177 | Not Available | + | 172101 - 175274 | 116391.0 |
| starch-binding associating with outer membrane | SAMN04488101_101178 | Not Available | + | 175367 - 176935 | 58975.5 |
| hypothetical protein | SAMN04488101_101179 | Not Available | + | 176925 - 179534 | 97541.9 |
| hypothetical protein | SAMN04488101_101180 | Not Available | + | 179542 - 182994 | 128539.0 |
| lysophospholipase l1 | SAMN04488101_101181 | Not Available | + | 183001 - 184446 | 53678.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.