Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| ferrous iron transport protein b | SAMN04488101_103119 | Not Available | + | 2077041 - 2079158 | 78140.1 |
| hypothetical protein | SAMN04488101_103120 | Not Available | + | 2079171 - 2079791 | 23820.7 |
| 2-oxoisovalerate dehydrogenase e1 component | SAMN04488101_103121 | Not Available | - | 2079802 - 2081778 | 73632.4 |
| l-lactate dehydrogenase complex protein lldf | SAMN04488101_103122 | Not Available | - | 2081781 - 2083169 | 52385.1 |
| peptidase family m28 | SAMN04488101_103123 | Not Available | - | 2083311 - 2084903 | 58373.5 |
| ribose 5-phosphate isomerase b | SAMN04488101_103124 | Not Available | - | 2084915 - 2085355 | 15963.9 |
| sec-independent protein translocase protein tatc | SAMN04488101_103125 | Not Available | - | 2085393 - 2086286 | 33454.8 |
| acetyl-coa carboxylase, biotin carboxylase subunit | SAMN04488101_103126 | Not Available | - | 2086392 - 2087732 | 49560.2 |
| acetyl-coa carboxylase biotin carboxyl carrier protein | SAMN04488101_103127 | Not Available | - | 2087768 - 2088244 | 17142.6 |
| 3-oxoacyl-[acyl-carrier-protein] synthase-3 | SAMN04488101_103128 | Not Available | - | 2088317 - 2089306 | 35788.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
