Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| regulatory protein, luxr family | SAMN04488101_101164 | Not Available | + | 156223 - 157014 | 30979.9 |
| phnb protein | SAMN04488101_101165 | Not Available | - | 157071 - 157499 | 16241.6 |
| atp-dependent rna helicase rhle | SAMN04488101_101166 | Not Available | + | 157740 - 159029 | 47301.8 |
| xtp/ditp diphosphohydrolase | SAMN04488101_101167 | Not Available | - | 159026 - 159832 | 30997.8 |
| predicted purr-regulated permease perm | SAMN04488101_101168 | Not Available | - | 159894 - 161006 | 41595.8 |
| trna u34 5-methylaminomethyl-2-thiouridine-forming methyltransferase mnmc | SAMN04488101_101169 | Not Available | - | 161071 - 161739 | 25253.1 |
| predicted dna-binding protein, mmcq/yjbr family | SAMN04488101_101170 | Not Available | + | 161796 - 162131 | 12906.7 |
| 5s ribosomal rna . bacterial tsu | Not Available | Not Available | + | 162456 - 162567 | 18.01 |
| 23s ribosomal rna . bacterial lsu | Not Available | Not Available | + | 162700 - 162957 | 18.01 |
| permease of the drug/metabolite transporter (dmt) superfamily | SAMN04488101_101171 | Not Available | - | 162294 - 163166 | 32232.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.