Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized damage-inducible protein dinb (forms a four-helix bundle) | SAMN04488101_10399 | Not Available | - | 2052938 - 2053438 | 19191.1 |
| hth domain-containing protein | SAMN04488101_103100 | Not Available | - | 2053519 - 2054208 | 26635.2 |
| cytosine/adenosine deaminase | SAMN04488101_103101 | Not Available | + | 2054294 - 2055472 | 43610.2 |
| enoyl-[acyl-carrier protein] reductase ii | SAMN04488101_103102 | Not Available | + | 2055491 - 2056438 | 33619.0 |
| acylphosphatase | SAMN04488101_103103 | Not Available | + | 2056488 - 2056766 | 10332.4 |
| membrane protein involved in the export of o-antigen and teichoic acid | SAMN04488101_103104 | Not Available | + | 2056767 - 2058239 | 55832.9 |
| deoxyuridine 5'-triphosphate nucleotidohydrolase | SAMN04488101_103105 | Not Available | + | 2058236 - 2058667 | 15615.7 |
| tetratricopeptide repeat-containing protein | SAMN04488101_103106 | Not Available | + | 2058671 - 2059726 | 39731.9 |
| protein of unknown function | SAMN04488101_103107 | Not Available | + | 2059704 - 2060495 | 29067.1 |
| septal ring factor envc, activator of murein hydrolases amia and amib | SAMN04488101_103108 | Not Available | + | 2060518 - 2061837 | 48425.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.