Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_10379 | Not Available | + | 2023416 - 2027033 | 133901.0 |
| susd family protein | SAMN04488101_10380 | Not Available | + | 2027044 - 2028522 | 55387.7 |
| substrate import-associated zinc metallohydrolase lipoprotein | SAMN04488101_10381 | Not Available | + | 2028525 - 2029928 | 52223.1 |
| protein of unknown function | SAMN04488101_10382 | Not Available | + | 2029930 - 2031279 | 48889.6 |
| fic/doc family protein | SAMN04488101_10383 | Not Available | + | 2031521 - 2033017 | 57729.7 |
| hypothetical protein | SAMN04488101_10384 | Not Available | + | 2033158 - 2034423 | 48050.3 |
| glycosyl transferase family 4 | SAMN04488101_10385 | Not Available | - | 2034619 - 2035272 | 24222.2 |
| l-rhamnose-h+ transport protein | SAMN04488101_10386 | Not Available | + | 2035445 - 2036524 | 39397.8 |
| rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | SAMN04488101_10387 | Not Available | + | 2036549 - 2038669 | 76516.3 |
| l-rhamnose isomerase / sugar isomerase | SAMN04488101_10388 | Not Available | + | 2038681 - 2039955 | 47007.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.