Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488101_10359 | Not Available | + | 1996895 - 1997974 | 40812.9 |
| pectate lyase superfamily protein | SAMN04488101_10360 | Not Available | + | 1998078 - 1999469 | 50562.4 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488101_10361 | Not Available | + | 1999469 - 2000539 | 41029.7 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN04488101_10362 | Not Available | + | 2000544 - 2001680 | 42606.1 |
| dtdp-4-dehydrorhamnose reductase | SAMN04488101_10363 | Not Available | + | 2001823 - 2002686 | 32037.4 |
| nucleoside-diphosphate-sugar epimerase | SAMN04488101_10364 | Not Available | + | 2002703 - 2003602 | 33503.0 |
| udp-n-acetylmuramyl pentapeptide phosphotransferase/udp-n-acetylglucosamine-1-phosphate transferase | SAMN04488101_10365 | Not Available | + | 2003687 - 2004631 | 36321.1 |
| ndp-sugar epimerase, includes udp-glcnac-inverting 4,6-dehydratase flaa1 and capsular polysaccharide biosynthesis protein epsc | SAMN04488101_10366 | Not Available | + | 2004729 - 2006681 | 73384.9 |
| hypothetical protein | SAMN04488101_10367 | Not Available | + | 2006684 - 2008291 | 61546.9 |
| dna-binding transcriptional regulator, fadr family | SAMN04488101_10368 | Not Available | + | 2008369 - 2009073 | 26996.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.