Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| transferase hexapeptide (six repeat-containing protein) | SAMN04488101_10349 | Not Available | + | 1986604 - 1987116 | 18430.1 |
| n-acetyl sugar amidotransferase | SAMN04488101_10350 | Not Available | + | 1987128 - 1988261 | 44625.8 |
| imidazole glycerol phosphate synthase subunit hish | SAMN04488101_10351 | Not Available | + | 1988264 - 1988878 | 23015.9 |
| cyclase | SAMN04488101_10352 | Not Available | + | 1988882 - 1989643 | 27656.5 |
| hypothetical protein | SAMN04488101_10353 | Not Available | + | 1989640 - 1990833 | 46024.3 |
| membrane protein involved in the export of o-antigen and teichoic acid | SAMN04488101_10354 | Not Available | + | 1990817 - 1992310 | 56078.1 |
| galnac-alpha-(1->4)-galnac-alpha-(1->3)- dinacbac-pp-undecaprenol alpha-1,4-n-acetyl-d-galactosaminyltransferase | SAMN04488101_10355 | Not Available | + | 1992307 - 1993383 | 40267.2 |
| hypothetical protein | SAMN04488101_10356 | Not Available | + | 1993377 - 1994570 | 46483.7 |
| asparagine synthase (glutamine-hydrolysing) | SAMN04488101_10357 | Not Available | + | 1994543 - 1996366 | 70672.9 |
| hexapeptide repeat of succinyl-transferase | SAMN04488101_10358 | Not Available | + | 1996359 - 1996889 | 19747.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.