Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| alpha-1,2-mannosidase, putative | SAMN04488101_10319 | Not Available | + | 1947697 - 1950084 | 88201.7 |
| alpha-1,2-mannosidase, putative | SAMN04488101_10320 | Not Available | + | 1950125 - 1952878 | 102583.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_10321 | Not Available | + | 1953169 - 1956360 | 116936.0 |
| starch-binding associating with outer membrane | SAMN04488101_10322 | Not Available | + | 1956380 - 1958347 | 73727.1 |
| protein of unknown function | SAMN04488101_10323 | Not Available | + | 1958396 - 1959574 | 42925.1 |
| protein of unknown function | SAMN04488101_10324 | Not Available | + | 1959602 - 1960663 | 37917.3 |
| glycosyl hydrolases family 38 n-terminal domain-containing protein | SAMN04488101_10325 | Not Available | + | 1960821 - 1963514 | 99921.7 |
| transcriptional regulator, gntr family | SAMN04488101_10326 | Not Available | + | 1963571 - 1964305 | 28430.4 |
| protein of unknown function | SAMN04488101_10327 | Not Available | - | 1964393 - 1965052 | 25052.3 |
| helix-turn-helix domain-containing protein | SAMN04488101_10328 | Not Available | + | 1965662 - 1965895 | 9267.36 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.