Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| fecr family protein | SAMN04488101_1039 | Not Available | - | 1926335 - 1927423 | 41390.8 |
| rna polymerase sigma factor, sigma-70 family | SAMN04488101_10310 | Not Available | - | 1927513 - 1928079 | 21835.5 |
| protein of unknown function | SAMN04488101_10311 | Not Available | + | 1928413 - 1928841 | 16934.3 |
| iron complex outermembrane recepter protein | SAMN04488101_10312 | Not Available | + | 1929059 - 1932454 | 123739.0 |
| susd and ragb outer membrane lipoprotein | SAMN04488101_10313 | Not Available | + | 1932501 - 1934195 | 63806.4 |
| glycosyl hydrolases family 38 n-terminal domain-containing protein | SAMN04488101_10314 | Not Available | + | 1934637 - 1937312 | 99517.7 |
| glycosyl hydrolases family 38 n-terminal domain-containing protein | SAMN04488101_10315 | Not Available | + | 1937367 - 1940123 | 101925.0 |
| protein of unknown function | SAMN04488101_10316 | Not Available | + | 1940144 - 1942093 | 72343.2 |
| alpha-1,2-mannosidase, putative | SAMN04488101_10317 | Not Available | + | 1942134 - 1945307 | 120642.0 |
| alpha-1,2-mannosidase, putative | SAMN04488101_10318 | Not Available | + | 1945331 - 1947673 | 87400.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.