Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized conserved protein yndb, ahsa1/start domain | SAMN04488101_102783 | Not Available | - | 1904529 - 1904966 | 16583.4 |
| hypothetical protein | SAMN04488101_102784 | Not Available | + | 1905214 - 1905642 | 15852.1 |
| anthranilate synthase component 1 | SAMN04488101_102785 | Not Available | + | 1905890 - 1907296 | 53191.9 |
| anthranilate synthase component 2 | SAMN04488101_102786 | Not Available | + | 1907301 - 1907885 | 21575.9 |
| indole-3-glycerol phosphate synthase | SAMN04488101_102787 | Not Available | + | 1907888 - 1908679 | 29065.1 |
| gtp-binding protein hflx | SAMN04488101_102788 | Not Available | + | 1908702 - 1909892 | 45449.9 |
| ribosome-binding factor a | SAMN04488101_102789 | Not Available | + | 1909911 - 1910288 | 14261.0 |
| tonb family c-terminal domain-containing protein | SAMN04488101_102790 | Not Available | + | 1910329 - 1910979 | 24511.6 |
| lipid kinase, yegs/rv2252/bmru family | SAMN04488101_102791 | Not Available | - | 1910984 - 1911862 | 32551.0 |
| uncharacterized conserved protein | SAMN04488101_102792 | Not Available | + | 1911906 - 1912883 | 37503.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.