Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| trna a37 threonylcarbamoyladenosine dehydratase | SAMN04488101_102773 | Not Available | + | 1887264 - 1888043 | 28651.9 |
| thioredoxin-like | SAMN04488101_102774 | Not Available | - | 1888055 - 1888564 | 18758.7 |
| atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) | SAMN04488101_102775 | Not Available | + | 1888691 - 1891918 | 121741.0 |
| pd-(d/e)xk nuclease superfamily protein | SAMN04488101_102776 | Not Available | + | 1891941 - 1894838 | 110312.0 |
| pyruvate dehydrogenase e1 component beta subunit | SAMN04488101_102777 | Not Available | + | 1895026 - 1896012 | 36142.8 |
| uncharacterized protein | SAMN04488101_102778 | Not Available | + | 1896164 - 1898476 | 84638.8 |
| l-asparaginase | SAMN04488101_102779 | Not Available | - | 1898874 - 1899716 | 29997.3 |
| cyanophycinase | SAMN04488101_102780 | Not Available | - | 1899720 - 1900595 | 30983.4 |
| cyanophycin synthetase | SAMN04488101_102781 | Not Available | + | 1900867 - 1903482 | 96011.9 |
| lrp/asnc family transcriptional regulator, regulator for asna, asnc and gida | SAMN04488101_102782 | Not Available | - | 1903504 - 1903977 | 17904.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.