Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_102763 | Not Available | - | 1878241 - 1878366 | 4922.27 |
| hypothetical protein | SAMN04488101_102764 | Not Available | + | 1878413 - 1878832 | 16392.7 |
| pyruvate kinase | SAMN04488101_102765 | Not Available | + | 1878974 - 1880404 | 52592.1 |
| Trna-ser | Not Available | Not Available | + | 1880453 - 1880540 | Not Available |
| hypothetical protein | SAMN04488101_102767 | Not Available | - | 1880601 - 1881266 | 24946.1 |
| glycerol uptake facilitator protein | SAMN04488101_102768 | Not Available | - | 1881564 - 1882295 | 25173.3 |
| glycerol kinase | SAMN04488101_102769 | Not Available | - | 1882329 - 1883819 | 53843.3 |
| outer membrane protein beta-barrel domain-containing protein | SAMN04488101_102770 | Not Available | - | 1883975 - 1884589 | 22055.4 |
| beta-glucosidase | SAMN04488101_102771 | Not Available | + | 1884893 - 1886599 | 62735.3 |
| tatd dnase family protein | SAMN04488101_102772 | Not Available | + | 1886609 - 1887262 | 24507.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.