Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycine/d-amino acid oxidase | SAMN04488101_102743 | Not Available | + | 1858230 - 1859432 | 45113.6 |
| hypothetical protein | SAMN04488101_102744 | Not Available | + | 1859957 - 1860658 | 26677.7 |
| argininosuccinate synthase | SAMN04488101_102745 | Not Available | + | 1860672 - 1861865 | 44150.6 |
| n-acetyl-gamma-glutamyl-phosphate reductase | SAMN04488101_102746 | Not Available | + | 1861855 - 1862826 | 35292.1 |
| acetylornithine aminotransferase | SAMN04488101_102747 | Not Available | + | 1862903 - 1864036 | 40930.0 |
| ornithine carbamoyltransferase | SAMN04488101_102748 | Not Available | + | 1864033 - 1864998 | 35968.3 |
| n-acetylglutamate kinase | SAMN04488101_102749 | Not Available | + | 1865015 - 1865803 | 27928.9 |
| pyrroline-5-carboxylate reductase | SAMN04488101_102750 | Not Available | + | 1865807 - 1866625 | 28356.5 |
| acetylornithine deacetylase | SAMN04488101_102751 | Not Available | + | 1866631 - 1867698 | 39109.4 |
| argininosuccinate lyase | SAMN04488101_102752 | Not Available | + | 1867682 - 1869046 | 50825.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.