Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| gdp-l-fucose synthase | SAMN04488101_102733 | Not Available | - | 1849086 - 1850015 | 34660.5 |
| trna (guanine-n7-)-methyltransferase | SAMN04488101_102734 | Not Available | + | 1850229 - 1850879 | 25287.3 |
| methylated-dna-protein-cysteine methyltransferase related protein | SAMN04488101_102735 | Not Available | + | 1850895 - 1851221 | 11877.4 |
| alkylhydroperoxidase ahpd family core domain-containing protein | SAMN04488101_102736 | Not Available | + | 1851261 - 1851602 | 13037.7 |
| dna-3-methyladenine glycosylase i | SAMN04488101_102737 | Not Available | + | 1851606 - 1852166 | 21262.8 |
| hypothetical protein | SAMN04488101_102738 | Not Available | - | 1852169 - 1852882 | 25968.6 |
| dna polymerase i | SAMN04488101_102739 | Not Available | + | 1853015 - 1855831 | 105158.0 |
| l-ascorbate metabolism protein ulag, beta-lactamase superfamily | SAMN04488101_102740 | Not Available | - | 1855892 - 1856569 | 24968.9 |
| hypothetical protein | SAMN04488101_102741 | Not Available | - | 1856596 - 1856901 | 10896.1 |
| peptidase family m28 | SAMN04488101_102742 | Not Available | - | 1856977 - 1858119 | 42144.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.