Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| membrane protein terc, possibly involved in tellurium resistance | SAMN04488101_102723 | Not Available | + | 1840467 - 1841258 | 29093.6 |
| hypothetical protein | SAMN04488101_102724 | Not Available | + | 1841268 - 1842317 | 40534.4 |
| predicted arabinose efflux permease, mfs family | SAMN04488101_102725 | Not Available | + | 1842499 - 1844043 | 56151.9 |
| hypothetical protein | SAMN04488101_102726 | Not Available | + | 1844056 - 1844295 | 8834.98 |
| 23s rrna (cytosine1962-c5)-methyltransferase | SAMN04488101_102727 | Not Available | - | 1844396 - 1845580 | 44008.5 |
| pp_01584 | SAMN04488101_102728 | Not Available | + | 1845850 - 1846185 | Not Available |
| trna(adenine34) deaminase | SAMN04488101_102729 | Not Available | + | 1846201 - 1846674 | 17286.7 |
| superoxide dismutase, fe-mn family | SAMN04488101_102730 | Not Available | + | 1846791 - 1847396 | 22360.4 |
| uncharacterized damage-inducible protein dinb (forms a four-helix bundle) | SAMN04488101_102731 | Not Available | - | 1847490 - 1848011 | 19874.4 |
| lysr family transcriptional regulator, hydrogen peroxide-inducible genes activator | SAMN04488101_102732 | Not Available | - | 1848115 - 1849047 | 35292.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.