Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| n-acetylmuramoyl-l-alanine amidase | SAMN04488101_102713 | Not Available | + | 1830966 - 1831805 | 31034.3 |
| glutaminyl-trna synthetase | SAMN04488101_102714 | Not Available | - | 1831838 - 1833499 | 63898.6 |
| methylmalonyl-coa mutase, c-terminal domain | SAMN04488101_102715 | Not Available | + | 1833580 - 1833999 | 15021.5 |
| enoyl-coa hydratase | SAMN04488101_102716 | Not Available | + | 1834003 - 1834785 | 27901.7 |
| two-component system, ntrc family, response regulator hydg | SAMN04488101_102717 | Not Available | + | 1834947 - 1836347 | 52292.8 |
| gas vesicle protein | SAMN04488101_102718 | Not Available | + | 1836564 - 1836833 | 9615.35 |
| putative holin-x, holin superfamily iii | SAMN04488101_102719 | Not Available | + | 1836856 - 1837239 | 14637.8 |
| hypothetical protein | SAMN04488101_102720 | Not Available | + | 1837214 - 1837666 | 16743.2 |
| orf6n domain-containing protein | SAMN04488101_102721 | Not Available | + | 1837821 - 1838396 | 22083.1 |
| aspartyl-trna synthetase | SAMN04488101_102722 | Not Available | - | 1838530 - 1840275 | 66075.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.