Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dinb superfamily protein | SAMN04488101_102703 | Not Available | - | 1818377 - 1818880 | 19390.0 |
| histidine kinase-, dna gyrase b-, and hsp90-like atpase | SAMN04488101_102704 | Not Available | - | 1818858 - 1820075 | 46707.2 |
| glutamyl-trna synthetase | SAMN04488101_102705 | Not Available | + | 1820165 - 1821673 | 56483.6 |
| hypothetical protein | SAMN04488101_102706 | Not Available | + | 1821744 - 1822583 | 30139.3 |
| signal transduction histidine kinase | SAMN04488101_102707 | Not Available | + | 1822698 - 1823822 | 42079.1 |
| signal transduction histidine kinase | SAMN04488101_102708 | Not Available | + | 1823836 - 1827420 | 133568.0 |
| mcp methyltransferase, cher-type | SAMN04488101_102709 | Not Available | + | 1827405 - 1828226 | 31837.4 |
| cheb methylesterase | SAMN04488101_102710 | Not Available | + | 1828226 - 1828789 | 20584.9 |
| two-component system, cell cycle response regulator divk | SAMN04488101_102711 | Not Available | + | 1828813 - 1829172 | 13205.7 |
| peptidase family m49 | SAMN04488101_102712 | Not Available | - | 1829165 - 1830847 | 62501.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.