Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_102693 | Not Available | + | 1806928 - 1808136 | 44286.8 |
| dipeptidyl aminopeptidase/acylaminoacyl peptidase | SAMN04488101_102694 | Not Available | + | 1808149 - 1809936 | 68414.4 |
| peroxiredoxin (alkyl hydroperoxide reductase subunit c) | SAMN04488101_102695 | Not Available | + | 1810077 - 1810709 | 23437.5 |
| thioredoxin | SAMN04488101_102696 | Not Available | + | 1810723 - 1811031 | 11532.8 |
| hypothetical protein | SAMN04488101_102697 | Not Available | + | 1811117 - 1811365 | 8983.75 |
| phosphoenolpyruvate carboxylase, type 1 | SAMN04488101_102698 | Not Available | - | 1811427 - 1814012 | 98041.3 |
| peptidoglycan/xylan/chitin deacetylase, pgda/cda1 family | SAMN04488101_102699 | Not Available | + | 1814560 - 1817076 | 94941.0 |
| hypothetical protein | SAMN04488101_102700 | Not Available | + | 1817057 - 1817320 | 9763.11 |
| protein of unknown function | SAMN04488101_102701 | Not Available | + | 1817355 - 1817909 | 20673.1 |
| 1,4-dihydroxy-2-naphthoyl-coa hydrolase | SAMN04488101_102702 | Not Available | - | 1817955 - 1818380 | 15388.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.