Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| translation elongation factor p (ef-p) | SAMN04488101_102683 | Not Available | + | 1796842 - 1797402 | 21293.4 |
| 5-formyltetrahydrofolate cyclo-ligase | SAMN04488101_102684 | Not Available | + | 1797544 - 1798104 | 21574.2 |
| ompa family protein | SAMN04488101_102685 | Not Available | + | 1798207 - 1799997 | 65849.6 |
| formiminoglutamase | SAMN04488101_102686 | Not Available | - | 1800045 - 1801016 | 34968.7 |
| imidazolonepropionase | SAMN04488101_102687 | Not Available | - | 1801016 - 1802260 | 44780.8 |
| exodeoxyribonuclease-3 | SAMN04488101_102688 | Not Available | - | 1802263 - 1803033 | 29686.3 |
| peptidyl-prolyl cis-trans isomerase b (cyclophilin b) | SAMN04488101_102689 | Not Available | - | 1803049 - 1803765 | 26665.2 |
| polyisoprenoid-binding protein ycei | SAMN04488101_102690 | Not Available | + | 1803909 - 1804481 | 20944.1 |
| aromatic ring-opening dioxygenase, catalytic subunit, ligb family | SAMN04488101_102691 | Not Available | + | 1804550 - 1805377 | 30727.0 |
| aldehyde dehydrogenase (nad+) | SAMN04488101_102692 | Not Available | - | 1805379 - 1806779 | 52044.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.