Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| pdz domain (also known as dhr or glgf) | SAMN04488101_102673 | Not Available | - | 1785387 - 1786631 | 45994.8 |
| d-alanyl-d-alanine carboxypeptidase / d-alanyl-d-alanine-endopeptidase (penicillin-binding protein 4) | SAMN04488101_102674 | Not Available | + | 1786672 - 1788024 | 51300.8 |
| alanine dehydrogenase | SAMN04488101_102675 | Not Available | - | 1788033 - 1789259 | 44267.3 |
| trna threonylcarbamoyladenosine biosynthesis protein tsae | SAMN04488101_102676 | Not Available | - | 1789322 - 1789741 | 15679.7 |
| response regulator receiver domain-containing protein | SAMN04488101_102677 | Not Available | - | 1789791 - 1791344 | 60510.5 |
| hypothetical protein | SAMN04488101_102678 | Not Available | + | 1791450 - 1792673 | 46547.7 |
| udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase | SAMN04488101_102679 | Not Available | + | 1792790 - 1793866 | 38428.8 |
| udp-3-o-[3-hydroxymyristoyl] n-acetylglucosamine deacetylase | SAMN04488101_102680 | Not Available | + | 1793866 - 1795275 | 51939.3 |
| acyl-[acyl-carrier-protein]--udp-n- acetylglucosamine o-acyltransferase | SAMN04488101_102681 | Not Available | + | 1795272 - 1796057 | 28463.3 |
| abc transporter | SAMN04488101_102682 | Not Available | + | 1796070 - 1796684 | 23042.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.