Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| l-aspartate oxidase | SAMN04488101_102663 | Not Available | + | 1770540 - 1772126 | 59305.0 |
| carbonic anhydrase or acetyltransferase, isoleucine patch superfamily | SAMN04488101_102664 | Not Available | + | 1772130 - 1772639 | 18341.2 |
| ig-like domain-containing protein | SAMN04488101_102665 | Not Available | - | 1772640 - 1774268 | 61720.0 |
| trna uridine 5-carboxymethylaminomethyl modification enzyme | SAMN04488101_102666 | Not Available | - | 1774412 - 1776274 | 69213.0 |
| atp-binding cassette, subfamily f, uup | SAMN04488101_102667 | Not Available | - | 1776538 - 1778400 | 71028.9 |
| rrna maturation rnase ybey | SAMN04488101_102668 | Not Available | - | 1779326 - 1779760 | 16642.0 |
| hypothetical protein | SAMN04488101_102669 | Not Available | - | 1779771 - 1783085 | 126552.0 |
| glycerophosphoryl diester phosphodiesterase | SAMN04488101_102670 | Not Available | + | 1783233 - 1784024 | 29602.9 |
| cold-shock dna-binding protein family | SAMN04488101_102671 | Not Available | - | 1784111 - 1784302 | 6960.28 |
| hypothetical protein | SAMN04488101_102672 | Not Available | - | 1784399 - 1785340 | 36070.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.