Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| bira family transcriptional regulator, biotin operon repressor / biotin-[acetyl-coa-carboxylase] ligase | SAMN04488101_102643 | Not Available | - | 1749284 - 1750060 | 29013.2 |
| ribosome-associated protein | SAMN04488101_102644 | Not Available | + | 1750102 - 1750476 | 14210.6 |
| membrane protease ftsh catalytic subunit | SAMN04488101_102645 | Not Available | + | 1750501 - 1752576 | 76556.5 |
| l-lactate dehydrogenase complex protein lldg | SAMN04488101_102646 | Not Available | + | 1752614 - 1753288 | 25717.9 |
| 3-oxoacyl-[acyl-carrier-protein] synthase-3 | SAMN04488101_102647 | Not Available | + | 1753344 - 1754426 | 39516.5 |
| hypothetical protein | SAMN04488101_102648 | Not Available | - | 1754423 - 1755916 | 55836.1 |
| hypothetical protein | SAMN04488101_102649 | Not Available | - | 1755989 - 1756732 | 28478.1 |
| dinuclear metal center protein, ybgi/sa1388 family | SAMN04488101_102650 | Not Available | - | 1756732 - 1757829 | 40719.9 |
| tm2 domain-containing protein | SAMN04488101_102651 | Not Available | - | 1757857 - 1758213 | 13473.7 |
| protein of unknown function | SAMN04488101_102652 | Not Available | - | 1758206 - 1758538 | 12360.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.