Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glutamate dehydrogenase/leucine dehydrogenase | SAMN04488101_102633 | Not Available | - | 1742540 - 1743766 | 45200.3 |
| large subunit ribosomal protein l19 | SAMN04488101_102634 | Not Available | - | 1743857 - 1744204 | 13035.9 |
| hypothetical protein | SAMN04488101_102635 | Not Available | - | 1744480 - 1744749 | 10644.0 |
| hypothetical protein | SAMN04488101_102636 | Not Available | - | 1744784 - 1745068 | 11261.9 |
| trna (guanine37-n(1)-) methyltransferase | SAMN04488101_102637 | Not Available | - | 1745291 - 1745968 | 25132.0 |
| 16s rrna processing protein rimm | SAMN04488101_102638 | Not Available | - | 1745983 - 1746510 | 20120.8 |
| small subunit ribosomal protein s16 | SAMN04488101_102639 | Not Available | - | 1746586 - 1747155 | 20480.2 |
| 5'(3')-deoxyribonucleotidase | SAMN04488101_102640 | Not Available | + | 1747315 - 1747833 | 20162.1 |
| uncharacterized conserved protein ybjq, upf0145 family | SAMN04488101_102641 | Not Available | + | 1747885 - 1748205 | 11090.5 |
| 6-phosphofructokinase | SAMN04488101_102642 | Not Available | - | 1748238 - 1749221 | 34909.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.