Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| molecular chaperone htpg | SAMN04488101_102623 | Not Available | - | 1731835 - 1733769 | 72871.8 |
| predicted zn-dependent peptidase | SAMN04488101_102624 | Not Available | + | 1733852 - 1735081 | 45949.4 |
| peptide deformylase | SAMN04488101_102625 | Not Available | + | 1735100 - 1735660 | 21514.1 |
| hypothetical protein | SAMN04488101_102626 | Not Available | - | 1735657 - 1736277 | 23114.9 |
| fe-s cluster biogenesis protein nfua, 4fe-4s-binding domain | SAMN04488101_102627 | Not Available | - | 1736354 - 1736599 | 8748.83 |
| atp-binding protein involved in chromosome partitioning | SAMN04488101_102628 | Not Available | - | 1736656 - 1737744 | 38766.1 |
| transglycosylase | SAMN04488101_102629 | Not Available | + | 1737905 - 1740061 | 81633.9 |
| hypoxanthine phosphoribosyltransferase | SAMN04488101_102630 | Not Available | + | 1740072 - 1740629 | 21011.2 |
| phosphatidylserine decarboxylase | SAMN04488101_102631 | Not Available | + | 1740684 - 1741343 | 24984.5 |
| mscs family membrane protein | SAMN04488101_102632 | Not Available | - | 1741416 - 1742534 | 42080.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.