Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04488101_102613 | Not Available | + | 1722367 - 1722654 | 11944.8 |
| protein of unknown function | SAMN04488101_102614 | Not Available | + | 1722710 - 1723744 | 39073.8 |
| signal recognition particle subunit ffh/srp54 (srp54) | SAMN04488101_102615 | Not Available | + | 1723828 - 1725162 | 49080.0 |
| magnesium chelatase family protein | SAMN04488101_102616 | Not Available | + | 1725286 - 1726824 | 55915.6 |
| hypothetical protein | SAMN04488101_102617 | Not Available | - | 1726821 - 1727102 | 10822.2 |
| thiol-disulfide isomerase or thioredoxin | SAMN04488101_102618 | Not Available | - | 1727130 - 1727729 | 22257.3 |
| hypothetical protein | SAMN04488101_102619 | Not Available | - | 1727942 - 1729255 | 47924.1 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04488101_102620 | Not Available | - | 1729252 - 1729845 | 23064.8 |
| protein of unknown function | SAMN04488101_102621 | Not Available | - | 1730038 - 1730739 | 25355.6 |
| phosphoribosyl-atp pyrophosphohydrolase | SAMN04488101_102622 | Not Available | + | 1731099 - 1731563 | 17521.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.