Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| zinc carboxypeptidase | SAMN04488101_102603 | Not Available | - | 1711854 - 1714337 | 92517.6 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | SAMN04488101_102604 | Not Available | + | 1714425 - 1715726 | 47676.0 |
| gliding motility-associated lipoprotein gldh | SAMN04488101_102605 | Not Available | - | 1715727 - 1716197 | 17724.1 |
| cell fate regulator yaat, psp1 superfamily (controls sporulation, competence, biofilm development) | SAMN04488101_102606 | Not Available | - | 1716190 - 1717644 | 54465.1 |
| dna polymerase-3 subunit delta' | SAMN04488101_102607 | Not Available | - | 1717647 - 1718795 | 43530.3 |
| putative holliday junction resolvase | SAMN04488101_102608 | Not Available | + | 1718891 - 1719307 | 15878.3 |
| predicted o-methyltransferase yrrm | SAMN04488101_102609 | Not Available | + | 1719304 - 1719939 | 24116.2 |
| flagellum-specific peptidoglycan hydrolase flgj | SAMN04488101_102610 | Not Available | + | 1719943 - 1720623 | 25711.6 |
| flagellum-specific peptidoglycan hydrolase flgj | SAMN04488101_102611 | Not Available | + | 1720623 - 1721525 | 33993.4 |
| hypothetical protein | SAMN04488101_102612 | Not Available | + | 1721573 - 1722325 | 28715.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.