Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna-binding transcriptional regulator, xre-family hth domain | SAMN04488101_102593 | Not Available | + | 1696518 - 1696931 | 15405.3 |
| hypothetical protein | SAMN04488101_102594 | Not Available | + | 1697183 - 1698013 | 31074.3 |
| methionyl-trna synthetase | SAMN04488101_102595 | Not Available | - | 1698006 - 1700114 | 79589.6 |
| muramoyltetrapeptide carboxypeptidase | SAMN04488101_102596 | Not Available | + | 1700156 - 1701055 | 33059.2 |
| hypothetical protein | SAMN04488101_102597 | Not Available | + | 1701073 - 1701192 | 4444.51 |
| hypothetical protein | SAMN04488101_102598 | Not Available | - | 1701307 - 1701783 | 16473.2 |
| starch-binding associating with outer membrane | SAMN04488101_102599 | Not Available | - | 1701758 - 1703254 | 54080.3 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_102600 | Not Available | - | 1703260 - 1706421 | 114065.0 |
| starch-binding associating with outer membrane | SAMN04488101_102601 | Not Available | - | 1707026 - 1708393 | 49543.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04488101_102602 | Not Available | - | 1708415 - 1711669 | 116221.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.