Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter nyackensis |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 16 |
| Temperature range | psychrotolerant |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter nyackensis
Accession NumberFWYB00000000.1
Gene Summary
Adenine Count
1845598 bp
Thymine Count
1830306 bp
Guanine Count
1224599 bp
Cytosine Count
1175798 bp
Genome Length
6077111 bp
Protein-coding Genes
4968 genes
Non-Coding Genes
63 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| serine/threonine-protein kinase hipa | SAMN04488101_102583 | Not Available | - | 1688139 - 1689398 | 47415.3 |
| helix-turn-helix domain-containing protein | SAMN04488101_102584 | Not Available | - | 1689398 - 1689688 | 11154.8 |
| hypothetical protein | SAMN04488101_102585 | Not Available | + | 1689880 - 1690644 | 29302.4 |
| hypothetical protein | SAMN04488101_102586 | Not Available | + | 1690717 - 1691283 | 21304.3 |
| hypothetical protein | SAMN04488101_102587 | Not Available | + | 1691468 - 1691890 | 15841.5 |
| outer membrane protein assembly factor bamb, contains pqq-like beta-propeller repeat | SAMN04488101_102588 | Not Available | - | 1692166 - 1693308 | 41058.7 |
| hypothetical protein | SAMN04488101_102589 | Not Available | - | 1693907 - 1694827 | 34747.0 |
| hypothetical protein | SAMN04488101_102590 | Not Available | - | 1694829 - 1695017 | 7065.33 |
| Trna-arg | Not Available | Not Available | + | 1695292 - 1695366 | Not Available |
| hepn domain-containing protein | SAMN04488101_102592 | Not Available | - | 1695512 - 1696393 | 33349.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.